miRBase entry: sbi-MIR5565c

Stem-loop sbi-MIR5565c


Accession
MI0019102
Description
Sorghum bicolor sbi-MIR5565c precursor miRNA
Gene family
MIPF0001279; MIR5565


Sequence

gauguagucggauucgcaucaauccacauguguugguguggauuggagugaaacuugaauuaaauuccaccccaauccacUACACAUGUGGAUUGAGGUGAauccg
........(((((((((.(((((((((((((((....(((((((((.(((.................))).))))))))).))))))))))))))).)))))))))

Structure
gauguagu         a               uggu         a   aaacuug 
        cggauucgc ucaauccacaugugu    guggauugg gug       a
        ||||||||| |||||||||||||||    ||||||||| |||       a
        gccuaAGUG AGUUAGGUGUACACA    caccuaacc cac       u
--------         G               ---U         c   cuuaaau 


Annotation confidence Not enough data
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Genome context
chr3: 18477631-18477736 [+]

Database links

Mature sbi-miR5565c

Accession MIMAT0022247
Description Sorghum bicolor sbi-miR5565c mature miRNA
Sequence 81 - UACACAUGUGGAUUGAGGUGA - 101
Evidence experimental
454 [1]

References

  1. PubMed ID: 21907786
    Identification and temporal expression analysis of conserved and novel microRNAs in Sorghum
    "Zhang L, Zheng Y, Jagadeeswaran G, Li Y, Gowdu K, Sunkar R"
    "Genomics (2011) 98:460-468