miRBase entry: sbi-MIR5565f

Stem-loop sbi-MIR5565f


Accession
MI0019099
Description
Sorghum bicolor sbi-MIR5565f precursor miRNA
Gene family
MIPF0001279; MIR5565


Sequence

ggaugUAGUCGGAUUUAUAUCAAUCcacauauguuggguggacugaaguggaauuugaacuaaauuccaacauauguggauugaggugaauccgacaacauccca
((((((.(((((((((((.((((((((((((((((((((((..((((......))))..)))...))))))))))))))))))).))))))))))).))))))..

Structure
--      A           A                   ---   ac    gu 
  ggaugU GUCGGAUUUAU UCAAUCcacauauguuggg   ugg  ugaa  g
  |||||| ||||||||||| |||||||||||||||||||   |||  ||||   
  ccuaca cagccuaagug aguuagguguauacaaccu   auc  guuu  g
ac      a           g                   uaa   aa    aa 


Annotation confidence Not enough data
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Genome context
chr1: 7604996-7605100 [-]

Database links

Mature sbi-miR5565f

Accession MIMAT0022244
Description Sorghum bicolor sbi-miR5565f mature miRNA
Sequence 6 - UAGUCGGAUUUAUAUCAAUC - 25
Evidence experimental
454 [1]

References

  1. PubMed ID: 21907786
    Identification and temporal expression analysis of conserved and novel microRNAs in Sorghum
    "Zhang L, Zheng Y, Jagadeeswaran G, Li Y, Gowdu K, Sunkar R"
    "Genomics (2011) 98:460-468