miRBase entry: sbi-MIR5564b

Stem-loop sbi-MIR5564b


Accession
MI0019097
Description
Sorghum bicolor sbi-MIR5564b precursor miRNA
Gene family
MIPF0001359; MIR5564


Sequence

cgggaGCAAUUCGUCGAACAGCUUGAggcgcgccggccgggcaacccgggcgucagccacgcacuccagcuguucgacgaaugccuccuccacgccaggcaaugc
.(((((..(((((((((((((((.((((((.((((.(((((...))))).))...))..))).))).)))))))))))))))..)))))................

Structure
---------------c     CA               U   -   -c  ---  g     c 
                gggaG  AUUCGUCGAACAGCU GAg gcg  gc   cg ccggg  
                |||||  ||||||||||||||| ||| |||  ||   || ||||| a
                uccuc  uaagcagcuugucga cuc cgc  cg   gc ggccc  
cguaacggaccgcacc     cg               c   a   ac  acu  g     a 


Annotation confidence Not enough data
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Genome context
chr9: 58719513-58719617 [+]

Database links

Mature sbi-miR5564b

Accession MIMAT0022242
Description Sorghum bicolor sbi-miR5564b mature miRNA
Sequence 6 - GCAAUUCGUCGAACAGCUUGA - 26
Evidence experimental
454 [1]

References

  1. PubMed ID: 21907786
    Identification and temporal expression analysis of conserved and novel microRNAs in Sorghum
    "Zhang L, Zheng Y, Jagadeeswaran G, Li Y, Gowdu K, Sunkar R"
    "Genomics (2011) 98:460-468