Stem-loop mtr-MIR408

Accession

MI0019094

Description

Medicago truncatula mtr-MIR408 precursor miRNA

Gene family

MIPF0000102; MIR408

Literature search

4 open access papers mention mtr-MIR408
(6 sentences)

Sequence

uaguuaaugacaggacaaagACAGGGAACAUGCAGAGCAUGgaugaaacuaucgacagugaaggaaacuguuguggcuccacucAUGCACUGCCUCUUCCCUGGCuuauaaucuguuuuuauuau
....(((.((((((...(((.(((((((...((((.((((((.((...(((.(((((((.......))))))))))...)).)))))).))))...))))))).)))....)))))).)))....

Structure

uagu   u      -aca   A       CAU    A      a  aaa   u       ga 
    uaa gacagg    aag CAGGGAA   GCAG GCAUGg ug   cua cgacagu  a
    ||| ||||||    ||| |||||||   |||| |||||| ||   ||| |||||||  g
    auu uugucu    uuC GUCCCUU   CGUC CGUAcu ac   ggu guuguca  g
uauu   u      aaua   G       CUC    A      c  cuc   -       aa 

Annotation confidence Not enough data

Genome context

chr1: 22930123-22930247 [+]

Mature mtr-miR408-5p

• Accession: MIMAT0022237
• Description: Medicago truncatula mtr-miR408-5p mature miRNA
• Sequence: 21 - ACAGGGAACAUGCAGAGCAUG - 41
• Evidence: experimental ; Illumina [1-3]

Mature mtr-miR408-3p

• Accession: MIMAT0022238
• Description: Medicago truncatula mtr-miR408-3p mature miRNA
• Sequence: 85 - AUGCACUGCCUCUUCCCUGGC - 105
• Evidence: experimental ; Illumina [1-3]

References

1. PubMed ID: 21762498
   Identification of drought-responsive microRNAs in Medicago truncatula by genome-wide high-throughput sequencing
   Wang T, Chen L, Zhao M, Tian Q, Zhang WH
   BMC Genomics (2011) 12:367


2. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553


3. PubMed ID: 23572382
   microRNA profiling of root tissues and root forming explant cultures in Medicago truncatula
   "Eyles RP, Williams PH, Ohms SJ, Weiller GF, Ogilvie HA, Djordjevic MA, Imin N"
   "Planta (2013) 238:91-105