Stem-loop mtr-MIR5562

Accession

MI0019090

Description

Medicago truncatula mtr-MIR5562 precursor miRNA

Sequence

auaaaacaguUGUGGAGUCUUUUGCAUGAAGuuucuugcugaaugggacgguggcaauaccgaaauggaaucguucaaagauugguccaaaacaacgagaaagcaugggaagaaugugaggguugcaaaaacuauggauuugagaauuggaauuuguucaacaauauuaagcgauucaagcaauagcaaaagaaacuAUGUGGAGAAGGCUGCAACcucauacu
........(((((..((((((((.((((.((((((((((((..((...(((((....))))).....((((((((((((...((((......((((......((((.......))))....)))).....))))....)))))((((........))))...........)))))))...)).)))))..))))))).)))).)))))))))))))........

Structure

auaaaaca     GG        G    A       --     aa  ggacgguggcaauaccgaaaug       ---------------------------     -gau    ccaaaa    gagaaa    gg 
        guUGU  AGUCUUUU CAUG AGuuucu  ugcug  ug                      gaaucgu                           ucaaa    uggu      caac      gcau  g
        |||||  |||||||| |||| |||||||  |||||  ||                      |||||||                           |||||    ||||      ||||      ||||  a
        CAACG  UCGGAAGA GUGU ucaaaga  acgau  ac                      cuuagcg                           aguuu    auca      guug      ugua  a
ucauacuc     --        G    A       aa     -a  -------------------gaa       aauuauaacaacuuguuuaagguuaag     aggu    -aaaac    --ggag    ag 

Annotation confidence Not enough data

Genome context

chr8: 11508769-11508992 [+]

Mature mtr-miR5562-5p

• Accession: MIMAT0022229
• Description: Medicago truncatula mtr-miR5562-5p mature miRNA
• Sequence: 11 - UGUGGAGUCUUUUGCAUGAAG - 31
• Evidence: experimental ; Illumina [1]

Mature mtr-miR5562-3p

• Accession: MIMAT0022230
• Description: Medicago truncatula mtr-miR5562-3p mature miRNA
• Sequence: 198 - AUGUGGAGAAGGCUGCAAC - 216
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21762498
   Identification of drought-responsive microRNAs in Medicago truncatula by genome-wide high-throughput sequencing
   Wang T, Chen L, Zhao M, Tian Q, Zhang WH
   BMC Genomics (2011) 12:367