miRBase entry: mtr-MIR5561

Stem-loop mtr-MIR5561


Accession
MI0019089
Description
Medicago truncatula mtr-MIR5561 precursor miRNA


Sequence

uggaaacuuuCAUUUGGAGAGACAUAGACAAaugaaauuaaaugauaauuuauuucaauGUCUAUCUCUCUCUAAAUGGAaguguccau
((((.(((((((((((((((((.(((((((..((((((.((((....)))))))))).))))))).))))))))))))))))).)))).

Structure
-    a                 C       Aa      u    g 
 ugga acuuuCAUUUGGAGAGA AUAGACA  ugaaau aaau a
 |||| ||||||||||||||||| |||||||  |||||| ||||  
 accu ugaAGGUAAAUCUCUCU UAUCUGu  acuuua uuua u
u    g                 C       -a      -    a 


Annotation confidence Not enough data
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Genome context
chr7: 33922012-33922100 [-]

Database links

Mature mtr-miR5561-5p

Accession MIMAT0022227
Description Medicago truncatula mtr-miR5561-5p mature miRNA
Sequence 11 - CAUUUGGAGAGACAUAGACAA - 31
Evidence experimental
Illumina [1-2]

Mature mtr-miR5561-3p

Accession MIMAT0022228
Description Medicago truncatula mtr-miR5561-3p mature miRNA
Sequence 60 - GUCUAUCUCUCUCUAAAUGGA - 80
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21762498
    Identification of drought-responsive microRNAs in Medicago truncatula by genome-wide high-throughput sequencing
    Wang T, Chen L, Zhao M, Tian Q, Zhang WH
    BMC Genomics (2011) 12:367

  2. PubMed ID: 22156213
    MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
    "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
    "Genes Dev (2011) 25:2540-2553