miRBase entry: mtr-MIR5560

Stem-loop mtr-MIR5560


Accession
MI0019087
Description
Medicago truncatula mtr-MIR5560 precursor miRNA


Sequence

agucggcaauccuCUCAUUCACUCAGCCGGUACAucauuggucguuggaauuugaucaggauccaacaacuacaugaugUGCCGGCUCAAUGAAUGCGGAGaauuucugac
.(((((.(((.((((((((((...((((((((((((((((((.((((((.(((.....))))))))).)))).))))))))))))))...)))))).)))).))).)))))

Structure
a     c   c    -      CUC              -    c      a   g 
 gucgg aau cuCU CAUUCA   AGCCGGUACAucau uggu guugga uuu a
 ||||| ||| |||| ||||||   |||||||||||||| |||| |||||| ||| u
 caguc uua GAGG GUAAGU   UCGGCCGUguagua auca caaccu agg c
-     u   a    C      AAC              c    a      -   a 


Annotation confidence Not enough data
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Genome context
chr6: 4372015-4372125 [+]

Database links

Mature mtr-miR5560-5p

Accession MIMAT0022223
Description Medicago truncatula mtr-miR5560-5p mature miRNA
Sequence 14 - CUCAUUCACUCAGCCGGUACA - 34
Evidence experimental
Illumina [1]

Mature mtr-miR5560-3p

Accession MIMAT0022224
Description Medicago truncatula mtr-miR5560-3p mature miRNA
Sequence 80 - UGCCGGCUCAAUGAAUGCGGAG - 101
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21762498
    Identification of drought-responsive microRNAs in Medicago truncatula by genome-wide high-throughput sequencing
    Wang T, Chen L, Zhao M, Tian Q, Zhang WH
    BMC Genomics (2011) 12:367