miRBase entry: mtr-MIR2592bn

Stem-loop mtr-MIR2592bn


Accession
MI0019084
Description
Medicago truncatula mtr-MIR2592bn precursor miRNA
Gene family
MIPF0000815; MIR2592

Literature search
1 open access papers mention mtr-MIR2592bn
(2 sentences)

Sequence

cucgagcauuucgCUCGGCAUUCAUGUUUUUCCUUugaaaauauuaaauucuuguuggguugguuuagaugaagguauuaagugucaagaaaugaaccucauuucguuggcacuugaauaccaucaucuaaagcacaccuaacaaaaauuuauucuuuucaaaGGAAAACAUGAAUGUCGGGUGaaaugcuuga
.(((((((((((((((((((((((((((((.((((((((((...((((((.(((((((((((.(((((((((.((((((((((((((((((((((...))))))).)))))))))).))))).))))))))).)).))))))))).))))))...)))))))))))))))))))))))))))))))))))))))

Structure
c                             U          uau      c         -  g         a     -          -       a 
 ucgagcauuucgCUCGGCAUUCAUGUUUU CCUUugaaaa   uaaauu uuguugggu ug uuuagauga gguau uaagugucaa gaaauga  
 ||||||||||||||||||||||||||||| ||||||||||   |||||| ||||||||| || ||||||||| ||||| |||||||||| ||||||| c
 aguucguaaaGUGGGCUGUAAGUACAAAA GGaaacuuuu   auuuaa aacaaucca ac aaaucuacu ccaua guucacgguu cuuuacu  
-                             -          cuu      a         c  g         a     a          g       c 


Annotation confidence Not enough data
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Genome context
chr5: 8281152-8281345 [+]

Database links

Mature mtr-miR2592bn-5p

Accession MIMAT0022217
Description Medicago truncatula mtr-miR2592bn-5p mature miRNA
Sequence 14 - CUCGGCAUUCAUGUUUUUCCUU - 35
Evidence experimental
Illumina [1]

Mature mtr-miR2592bn-3p

Accession MIMAT0022218
Description Medicago truncatula mtr-miR2592bn-3p mature miRNA
Sequence 164 - GGAAAACAUGAAUGUCGGGUG - 184
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21762498
    Identification of drought-responsive microRNAs in Medicago truncatula by genome-wide high-throughput sequencing
    Wang T, Chen L, Zhao M, Tian Q, Zhang WH
    BMC Genomics (2011) 12:367