Stem-loop sequence mtr-MIR2592bn

Accession

MI0019084 (change log)

Description

Medicago truncatula miR2592bn stem-loop

Gene family

MIPF0000815; MIR2592

Literature search

1 open access papers mention mtr-MIR2592bn
(2 sentences)

Stem-loop

   c                             u          uau      c         -  g         a     -          -      a 
5'  ucgagcauuucgcucggcauucauguuuu ccuuugaaaa   uaaauu uuguugggu ug uuuagauga gguau uaagugucaa gaaaug a
    ||||||||||||||||||||||||||||| ||||||||||   |||||| ||||||||| || ||||||||| ||||| |||||||||| |||||| c
3'  aguucguaaagugggcuguaaguacaaaa ggaaacuuuu   auuuaa aacaaucca ac aaaucuacu ccaua guucacgguu cuuuac c
   -                             -          cuu      a         c  g         a     a          g      u 

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (JCVI_Mt3.5.2): chr5: 8281152-8281345 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0019084

Mature sequence mtr-miR2592bn-5p

• Accession: MIMAT0022217
• Previous IDs: mtr-miR2592bn*
• Sequence: 14 - cucggcauucauguuuuuccuu - 35
• Evidence: experimental; Illumina [1]

Mature sequence mtr-miR2592bn-3p

• Accession: MIMAT0022218
• Previous IDs: mtr-miR2592bn
• Sequence: 164 - ggaaaacaugaaugucgggug - 184
• Evidence: experimental; Illumina [1]

References

1. PMID:21762498 "Identification of drought-responsive microRNAs in Medicago truncatula by genome-wide high-throughput sequencing" Wang T, Chen L, Zhao M, Tian Q, Zhang WH BMC Genomics. 12:367(2011).