Stem-loop sequence mtr-MIR2592bm

Accession

MI0019082 (change log)

Description

Medicago truncatula miR2592bm stem-loop

Gene family

MIPF0000815; MIR2592

Literature search

1 open access papers mention mtr-MIR2592bm
(2 sentences)

Stem-loop

   c                             u            u      c      g   -ga         au    -          ug       
5'  ucaagcauuucgcucggcauucauguuuu ccuuugaaaaga uaaauu uuguua guu   uuuagauga  guau uaagugucaa  aaugaa 
    ||||||||||||||||||||||||||||| |||||||||||| |||||| |||||| |||   |||||||||  |||| ||||||||||  ||||| c
3'  aguucguaaagugggcuguaaguacaaaa ggaaacuuuucu auuuaa aacgau cga   aaaucuacu  uaua guucacgguu  uuauuc 
   -                             -            u      a      g   aca         ac    a          gu       

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): chr5: 2926606-2926798 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0019082

Mature sequence mtr-miR2592bm-5p

• Accession: MIMAT0022213
• Previous IDs: mtr-miR2592bm*
• Sequence: 14 - cucggcauucauguuuuuccuu - 35
• Evidence: experimental; Illumina [1]

Mature sequence mtr-miR2592bm-3p

• Accession: MIMAT0022214
• Previous IDs: mtr-miR2592bm
• Sequence: 163 - ggaaaacaugaaugucgggug - 183
• Evidence: experimental; Illumina [1]

References

1. PMID:21762498 "Identification of drought-responsive microRNAs in Medicago truncatula by genome-wide high-throughput sequencing" Wang T, Chen L, Zhao M, Tian Q, Zhang WH BMC Genomics. 12:367(2011).