Stem-loop sequence mtr-MIR2592bl

Accession

MI0019078 (change log)

Description

Medicago truncatula miR2592bl stem-loop

Gene family

MIPF0000815; MIR2592

Literature search

1 open access papers mention mtr-MIR2592bl
(2 sentences)

Stem-loop

   ag                       u  cu      a   uaa          u          g 
5'   uuguuguuuggcaaguuugaauu ac  cauuca agg   gauaauuguu uaguuggaag u
     ||||||||||||||||||||||| ||  |||||| |||   |||||||||| ||||||||||  
3'   gacggcaaauuguucaaacuuaa ug  guaggu ucc   cuguuaacaa aucaaccuuc g
   ag                       -  ag      c   -uc          c          c 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): chr4: 20867262-20867391 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0019078

Mature sequence mtr-miR2592bl-5p

• Accession: MIMAT0022205
• Previous IDs: mtr-miR2592bl
• Sequence: 11 - uggcaaguuugaauuuaccuca - 32
• Evidence: experimental; Illumina [1]

Mature sequence mtr-miR2592bl-3p

• Accession: MIMAT0022206
• Previous IDs: mtr-miR2592bl*
• Sequence: 102 - gaguaauucaaacuuguuaaa - 122
• Evidence: experimental; Illumina [1]

References

1. PMID:21762498 "Identification of drought-responsive microRNAs in Medicago truncatula by genome-wide high-throughput sequencing" Wang T, Chen L, Zhao M, Tian Q, Zhang WH BMC Genomics. 12:367(2011).