miRBase entry: mtr-MIR2619b

Stem-loop mtr-MIR2619b


Accession
MI0019077
Description
Medicago truncatula mtr-MIR2619b precursor miRNA
Gene family
MIPF0001294; MIR2619

Literature search
1 open access papers mention mtr-MIR2619b
(1 sentences)

Sequence

aaacagccccAUAUGUUUUGAUUCUUUGGCAguuuuggccccccaaggcaaaauaaaaauaaaaaauuugacacauggcaccucacuuagggugccacgucagcguugaccgagucaacacugaacuggggguucaaaacugCCAAAGAAUCAAUACAUAGGGggcugauu
...(((((((.(((((.(((((((((((((((((((((.((((((..............................((((((((......))))))))..((((.((((((...)))))).))))..)))))).))))))))))))))))))))).))))).)))))))...

Structure
aaa       A     U                     c      aggcaaaauaaaaauaaaaaauuugacacauggcaccucacuuagggugccacg    c      c 
   cagcccc UAUGU UUGAUUCUUUGGCAguuuugg ccccca                                                      ucag guugac  
   ||||||| ||||| ||||||||||||||||||||| ||||||                                                      |||| |||||| g
   gucggGG AUACA AACUAAGAAACCgucaaaacu gggggu                                                      aguc caacug  
uua       G     U                     u      ----------------------------------------------------ca    a      a 


Annotation confidence Not enough data
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Genome context
chr4: 7493105-7493275 [+]

Database links

Mature mtr-miR2619b-5p

Accession MIMAT0022203
Description Medicago truncatula mtr-miR2619b-5p mature miRNA
Sequence 11 - AUAUGUUUUGAUUCUUUGGCA - 31
Evidence experimental
Illumina [1]

Mature mtr-miR2619b-3p

Accession MIMAT0022204
Description Medicago truncatula mtr-miR2619b-3p mature miRNA
Sequence 143 - CCAAAGAAUCAAUACAUAGGG - 163
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21762498
    Identification of drought-responsive microRNAs in Medicago truncatula by genome-wide high-throughput sequencing
    Wang T, Chen L, Zhao M, Tian Q, Zhang WH
    BMC Genomics (2011) 12:367