miRBase entry: mtr-MIR5554a

Stem-loop mtr-MIR5554a


Accession
MI0019075
Description
Medicago truncatula mtr-MIR5554a precursor miRNA
Gene family
MIPF0000815; MIR2592

Literature search
1 open access papers mention mtr-MIR5554a
(1 sentences)

Sequence

cagcaugcgaUGUGCAUCUUGAACAAUGGUAUucaagugucaagaaaugcaccucauucuuuugaaacuugaauACCAUCGUUGCAGAUGCUCAUCggauguugg
((((((.(((((.((((((..(((.(((((((((((((.((((((((((.....)))).)))))).))))))))))))).)))..)))))).))))).)))))).

Structure
-      g     U      UG   A             g      -    c 
 cagcau cgaUG GCAUCU  AAC AUGGUAUucaagu ucaaga aaug a
 |||||| ||||| ||||||  ||| ||||||||||||| |||||| |||| c
 guugua gCUAC CGUAGA  UUG UACCAuaaguuca aguuuu uuac c
g      g     U      CG   C             a      c    u 


Annotation confidence Not enough data
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Genome context
chr1: 32660180-32660284 [-]

Database links

Mature mtr-miR5554a-5p

Accession MIMAT0022199
Description Medicago truncatula mtr-miR5554a-5p mature miRNA
Sequence 11 - UGUGCAUCUUGAACAAUGGUAU - 32
Evidence experimental
Illumina [1]

Mature mtr-miR5554a-3p

Accession MIMAT0022200
Description Medicago truncatula mtr-miR5554a-3p mature miRNA
Sequence 75 - ACCAUCGUUGCAGAUGCUCAUC - 96
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21762498
    Identification of drought-responsive microRNAs in Medicago truncatula by genome-wide high-throughput sequencing
    Wang T, Chen L, Zhao M, Tian Q, Zhang WH
    BMC Genomics (2011) 12:367