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miRBase |
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Stem-loop sequence osa-MIR5540 |
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Accession | MI0019061 (change log) | ||||
Description | Oryza sativa miR5540 stem-loop | ||||
Gene family | MIPF0001604; MIR5160 | ||||
Literature search |
1 open access papers mention osa-MIR5540 | ||||
Stem-loop |
u u a ucgcacaacc u ga a a cauugaaa a accgugcacgauaauuaaucacuaauuauuauuagcuaauaguuaauuauguacuugaucacuaauu 5' uuugcga aauaua cgucgaucucgcacgauc guugcgcgaaaaugacg g ugugac uugcag cgguauugcg gu cgagaccgc a ||||||| |||||| |||||||||||||||||| ||||||||||||||||| | |||||| |||||| |||||||||| || ||||||||| 3' aaacgcu uuauau gcagcuagagcguguuag uaacgcgcuuuuauugc u gcacug agcguc gccauagcgc ca gcucuggcg a - u g ---------- c ac c c acccgaua c cgccagaaugcuuuacuuucucgcuccagaacgacuuugucagacgcugucauaauuggccgaggua |
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Deep sequencing |
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Confidence |
Annotation confidence: not enough data
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Genome context |
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Database links |
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Mature sequence osa-miR5540 |
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Accession | MIMAT0022176 |
Sequence |
313 - uugugcgagaucgacgguaua - 333 |
Deep sequencing | 155 reads, 2 experiments |
Evidence | experimental; Illumina [1] |
Database links |
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References |
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1 |