miRBase entry: osa-MIR5530

Stem-loop osa-MIR5530


Accession
MI0019050
Description
Oryza sativa osa-MIR5530 precursor miRNA

Literature search
1 open access papers mention osa-MIR5530
(1 sentences)

Sequence

acuguuggcgAGUGGUGUCGUAUUACCUGCCcuuauaggacaugaugcaucaugcaugcauuauggcugggagcaugauaugauaccucuaguauguaaacuaauaauuaguagcagg
.(((((.((.((.((((((((((((..((((((....((.((((((((((.....)))))))))).))))).))))))))))))))).)).))......(((((...)))))))))).

Structure
a     ------------------g  g  U            CC   -   uaua  a          c 
 cuguu                   gc AG GGUGUCGUAUUA  UGC Ccu    gg caugaugcau a
 |||||                   || || ||||||||||||  ||| |||    || |||||||||| u
 gacga                   ug uc ccauaguauagu  acg ggg    uc guauuacgua g
g     ugauuaauaaucaaaugua  a  u            --   a   ----  g          c 


Annotation confidence Not enough data
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Genome context
Chr12: 21782328-21782445 [+]

Database links

Mature osa-miR5530

Accession MIMAT0022165
Description Oryza sativa osa-miR5530 mature miRNA
Sequence 11 - AGUGGUGUCGUAUUACCUGCC - 31
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21679406
    Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
    Wei LQ, Yan LF, Wang T
    Genome Biol (2011) 12:R53