miRBase entry: osa-MIR2275d

Stem-loop osa-MIR2275d


Accession
MI0019043
Description
Oryza sativa osa-MIR2275d precursor miRNA
Gene family
MIPF0000797; MIR2275

Literature search
14 open access papers mention osa-MIR2275d
(87 sentences)

Sequence

uuguucaggcacuggaagugagaauuggaggaaaacaaacugauugcugguuguuguuugcaacaguguggcaaacaauguucagCUUGUUUUUCUCCAAUAUCUCAccuucagguugauugcuuga
....((((((((((((.(((((((((((((((((((((.......(((((.((((((((((.((...)).)))))))))).)))))))))))))))))))).)))))).)))))......)))))))

Structure
uugu       ------     a      -               acugauu     u          a  a 
    ucaggca      cugga gugaga auuggaggaaaacaa       gcugg uguuguuugc ac  
    |||||||      ||||| |||||| |||||||||||||||       ||||| |||||||||| || g
    aguucgu      gacuu cACUCU UAACCUCUUUUUGUU       Cgacu guaacaaacg ug  
----       uaguug     c      A               -------     u          g  u 


Annotation confidence Not enough data
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Genome context
Chr8: 3736806-3736932 [-]

Database links

Mature osa-miR2275d

Accession MIMAT0022158
Description Oryza sativa osa-miR2275d mature miRNA
Sequence 86 - CUUGUUUUUCUCCAAUAUCUCA - 107
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 21679406
    Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
    Wei LQ, Yan LF, Wang T
    Genome Biol (2011) 12:R53

  2. PubMed ID: 22158467
    Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
    "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
    "Plant Cell (2011) 23:4185-4207