miRBase entry: osa-MIR5522

Stem-loop osa-MIR5522


Accession
MI0019041
Description
Oryza sativa osa-MIR5522 precursor miRNA


Sequence

16 reads, 12 reads per million, 2 experiments
agcaccuaagAACAAUAGGAAUGGGAGGCAUuaggaaaguugcaagccaagucuccacaaacauggagcuugcacuuuccuccauguucccauuccuacagcucuuagacccu
.....((((((.(..((((((((((((.(((.((((((((.((((((......((((......))))))))))))))))))..)))))))))))))))..).)))))).....

Structure
agcac      A AA            G   -u        u      caaguc    ca 
     cuaagA C  UAGGAAUGGGAG CAU  aggaaagu gcaagc      ucca  a
     |||||| |  |||||||||||| |||  |||||||| ||||||      ||||   
     gauucu g  auccuuacccuu gua  uccuuuca cguucg      aggu  a
uccca      c ac            -   cc        -      ------    ac 


Annotation confidence Not enough data
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Genome context
Chr4: 21650324-21650436 [+]
Clustered miRNAs
14 other miRNAs are < 10 kb from osa-MIR5522
Name Accession Chromosome Start End Strand Confidence




Database links

Mature osa-miR5522

Accession MIMAT0022156
Description Oryza sativa osa-miR5522 mature miRNA
Sequence 11 - AACAAUAGGAAUGGGAGGCAU - 31
Evidence experimental
Illumina [1]
Database links

References

  1. PubMed ID: 21679406
    Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
    Wei LQ, Yan LF, Wang T
    Genome Biol (2011) 12:R53