Stem-loop sequence osa-MIR5504

Accession

MI0019022 (change log)

Description

Oryza sativa miR5504 stem-loop

Literature search

3 open access papers mention osa-MIR5504
(8 sentences)

Stem-loop

   auu      uuuu uu g   g  c  g          --u     g -  u 
5'    gcugaa    g  c uug ag uu uucuguuauu   uauuu c ac g
      ||||||    |  | ||| || || ||||||||||   ||||| | ||  
3'    cgacuu    c  g aac uc ag agggcaguga   auaaa g ug c
   uuu      ---- uu g   g  -  g          cac     g a  c 

Deep sequencing

12 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (MSU7): Chr10: 17228165-17228262 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0019022

Mature sequence osa-miR5504

• Accession: MIMAT0022137
• Sequence: 66 - agugacgggaggacugcaagg - 86
• Deep sequencing: 10 reads, 2 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS0000254298_39947

References

1. PMID:21679406 "Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa" Wei LQ, Yan LF, Wang T Genome Biol. 12:R53(2011).