miRBase entry: osa-MIR5500

Stem-loop osa-MIR5500


Accession
MI0019018
Description
Oryza sativa osa-MIR5500 precursor miRNA


Sequence

3 reads, 1 reads per million, 1 experiments
aggauacgccugccccgcucgauuaucacugaugauuaauuuucaaaagaagaauAUCACUGAUGAAAUCUUGCGGCggcuugugucc
.(((((((...(((((((..((((((((.(((((.....(((((....))))).))))).))))))..))..)))).))).)))))))

Structure
a       ccu   -    uc  --      c     auuaa     a 
 ggauacg   gcc ccgc  ga  uuauca ugaug     uuuuc a
 |||||||   ||| ||||  ||  |||||| |||||     |||||  
 ccugugu   cgg GGCG  CU  AGUAGU ACUAu     agaag a
-       --u   C    UU  AA      C     ----a     a 


Annotation confidence Not enough data
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Genome context
Chr4: 27731022-27731109 [+]

Database links

Mature osa-miR5500

Accession MIMAT0022133
Description Oryza sativa osa-miR5500 mature miRNA
Sequence 56 - AUCACUGAUGAAAUCUUGCGGC - 77
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21679406
    Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
    Wei LQ, Yan LF, Wang T
    Genome Biol (2011) 12:R53