miRBase entry: osa-MIR5494

Stem-loop osa-MIR5494


Accession
MI0019012
Description
Oryza sativa osa-MIR5494 precursor miRNA


Sequence

auuuguuucuUUAUAGGAGGUAUAGACGGUAgccacgucacuuucuuuuugccuaaucccaugcacgagaacugaagccccucucuguaucuugauaugacaucgcauagaaacaaga
..(((((((((((((.((((((((((.((..((....(((..(((((..(((..........))).))))).))).))..)).))))))))))..)))))........))))))))..

Structure
au        --------     -G          C  UA  cacg   cu     uu   cuaa 
  uuguuucu        UUAUA  GAGGUAUAGA GG  gc    uca  uucuu  ugc    u
  ||||||||        |||||  |||||||||| ||  ||    |||  |||||  |||     
  aacaaaga        aguau  uucuaugucu uc  cg    agu  aagag  acg    c
ag        uacgcuac     ag          c  cc  ---a   -c     -c   uacc 


Annotation confidence Not enough data
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Genome context
Chr1: 2317278-2317395 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from osa-MIR5494
Name Accession Chromosome Start End Strand Confidence




Database links

Mature osa-miR5494

Accession MIMAT0022127
Description Oryza sativa osa-miR5494 mature miRNA
Sequence 11 - UUAUAGGAGGUAUAGACGGUA - 31
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21679406
    Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
    Wei LQ, Yan LF, Wang T
    Genome Biol (2011) 12:R53