Stem-loop sequence osa-MIR5487

Accession

MI0019005 (change log)

Description

Oryza sativa miR5487 stem-loop

Literature search

2 open access papers mention osa-MIR5487
(3 sentences)

Stem-loop

   ag      uaaa  a    -        u c    --     aagcgaguuugguguuaugacaagcugguuggaguacucguauuugaugaacauccucauuuuaaaauu 
5'   aacagc    ag ugug cauguagu c ggcu  uaauu                                                                     u
     ||||||    || |||| |||||||| | ||||  |||||                                                                     u
3'   uugucg    uc acac guacguua g ccgg  auuaa                                                                     a
   gg      -cca  -    u        u u    ua     aauucauacccuucucucguauacguaucgguacuacgguagaugaguuauaaagugagaagguuagua 

Deep sequencing

1 reads, 0 reads per million, 1 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (MSU7): Chr4: 17569162-17569381 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0019005

Mature sequence osa-miR5487

• Accession: MIMAT0022120
• Sequence: 11 - aaagaugugcauguaguuccg - 31
• Evidence: experimental; Illumina [1]

References

1. PMID:21679406 "Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa" Wei LQ, Yan LF, Wang T Genome Biol. 12:R53(2011).