miRBase entry: osa-MIR5484

Stem-loop osa-MIR5484


Accession
MI0019002
Description
Oryza sativa osa-MIR5484 precursor miRNA

Literature search
1 open access papers mention osa-MIR5484
(3 sentences)

Sequence

ggcggccggcugcggcgacggcggcuuggaugggucgccuuccucccuugcugcucggaugaacccucgccgcaugcaucgcgaucuugauauucuuggcauggaauuaauagcgucucuuuuuuaucccccuuacgguucuugaucuccagcgcuucucugaauucucugguucuucuugcucgcucaauuuacuuguuuuguuuucucgauugauugguugccugaucagcugugcuguggaugcaugcgauguugcaaAACCGAGCGCGCUGUUGAUUAaucuuaucuc
(((((((((((((((((((((((((..((..(((......)))..))..))))).)).........)))))))).))...((((.(..((.......(.((.((((((...((((.((.....(((....((....))....))).....))))))......)))))).)).)...))..).))))((((((..................)))))).))))))))((((((((((((((.(((.((((........))))...)))))))))..))))))))..........

Structure
ggcggccggcugcggcgacggcggcuuggaugggucgccuuccucccuugcugcucggaugaacccucgccgcaugcaucgcgaucuugauauucuuggcauggaauuaauagcgucucuuuuuuaucccccuuacgguucuugaucuccagcgcuucucugaauucucugguucuucuugcucgcucaauuuacuuguuuuguuuucucgauugauugguugcc        --      g   --a    ugc 
                                                                                                                                                                                                                                 ugaucagc  ugugcu ugg   ugca   g
                                                                                                                                                                                                                                 ||||||||  |||||| |||   ||||    
                                                                                                                                                                                                                                 AUUAGUUG  GCGCGA GCC   acgu   a
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------cucuauucua        UC      -   AAa    ugu 


Annotation confidence Not enough data
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Genome context
Chr2: 7796922-7797213 [-]

Database links

Mature osa-miR5484

Accession MIMAT0022117
Description Oryza sativa osa-miR5484 mature miRNA
Sequence 262 - AACCGAGCGCGCUGUUGAUUA - 282
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21679406
    Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
    Wei LQ, Yan LF, Wang T
    Genome Biol (2011) 12:R53