Stem-loop amg-MIR396

Accession

MI0018987

Description

Acacia mangium amg-MIR396 precursor miRNA

Gene family

MIPF0000047; MIR396

Literature search

2 open access papers mention amg-MIR396
(6 sentences)

Sequence

cuauggcucucucuguauucUUCCACAGCUUUCUUGAACUGcaucgaucgaagaaagagcaagcuuuguucucucuuacaugcaugccaaaucgucuucuugcgguucaauaaagcugugggaagauacagauagggucaaccac
...(((((((.((((((((.((((((((((((.((((((((((..((..((.((....(((.((..(((........))).)).)))....)).)).)).)))))))))).)))))))))))).)))))))).))))))).....

Structure

--cua       c        c            C          uc  uc  a  aaga   a  uu   ucu 
     uggcucu ucuguauu UUCCACAGCUUU UUGAACUGca  ga  ga ga    gca gc  ugu   c
     ||||||| |||||||| |||||||||||| ||||||||||  ||  || ||    ||| ||  |||    
     acuggga agacauag agggugucgaaa aacuuggcgu  cu  cu cu    cgu cg  aca   u
cacca       u        a            u          -u  -u  g  aaac   a  -u   uuc 

Annotation confidence Not enough data

Genome context

Unknown

Mature amg-miR396

• Accession: MIMAT0022680
• Description: Acacia mangium amg-miR396 mature miRNA
• Sequence: 21 - UUCCACAGCUUUCUUGAACUG - 41
• Evidence: not_experimental

References

1. PubMed ID: 21729267
   Identification of lignin genes and regulatory sequences involved in secondary cell wall formation in Acacia auriculiformis and Acacia mangium via de novo transcriptome sequencing
   Wong MM, Cannon CH, Wickneswari R
   BMC Genomics (2011) 12:342