miRBase entry: aca-mir-5452

Stem-loop aca-mir-5452


Accession
MI0018956
Description
Anolis carolinensis aca-mir-5452 precursor miRNA


Sequence

gaaggggggcaccuuUGGCCCUCCUGUUGCUGCUGgaguccagcucucaaucCAACAACAGCCGGAGGGCUGGagguuccccaccuca
((.((((((.((((((((((((((.((((.((.((((.............)))).)).)))).)))))))))))))).)))).)))).

Structure
-  a  -    c              U    C  C    gucca 
 ga gg gggg accuuUGGCCCUCC GUUG UG UGga     g
 || || |||| |||||||||||||| |||| || ||||     c
 cu cc cccc uggaGGUCGGGAGG CGAC AC ACcu     u
a  -  a    u              C    A  A    aacuc 


Annotation confidence Not enough data
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Genome context
GL343282.1: 1468391-1468478 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from aca-mir-5452
Name Accession Chromosome Start End Strand Confidence




Database links

Mature aca-miR-5452-5p

Accession MIMAT0022075
Description Anolis carolinensis aca-miR-5452-5p mature miRNA
Sequence 16 - UGGCCCUCCUGUUGCUGCUG - 35
Evidence experimental
Illumina [1]

Mature aca-miR-5452-3p

Accession MIMAT0022076
Description Anolis carolinensis aca-miR-5452-3p mature miRNA
Sequence 53 - CAACAACAGCCGGAGGGCUGG - 73
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21775315
    MicroRNAs support a turtle + lizard clade
    "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
    "Biol Lett (2012) 8:104-107