miRBase entry: aca-mir-5417

Stem-loop aca-mir-5417


Accession
MI0018920
Description
Anolis carolinensis aca-mir-5417 precursor miRNA


Sequence

uggccgggacugaggagagaaggcgugggaaggagcgggcuccggcgcUCAUCCCAGCCCCUUUUCUCCCCUggacu
.(((((((.....((((((((((.((((((..(((((........))))).))))).).))))))))))))))).))

Structure
u  -     acuga          c -     ag     ggc 
 gg ccggg     ggagagaagg g uggga  gagcg   u
 || |||||     |||||||||| | |||||  |||||    
 uc ggUCC     CCUCUUUUCC C ACCCU  CUcgc   c
-  a     -----          C G     -A     ggc 


Annotation confidence Not enough data
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Genome context
GL343364.1: 1077037-1077113 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from aca-mir-5417
Name Accession Chromosome Start End Strand Confidence




Database links

Mature aca-miR-5417

Accession MIMAT0022037
Description Anolis carolinensis aca-miR-5417 mature miRNA
Sequence 49 - UCAUCCCAGCCCCUUUUCUCCCCU - 72
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21775315
    MicroRNAs support a turtle + lizard clade
    "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
    "Biol Lett (2012) 8:104-107