miRBase entry: aca-mir-449c

Stem-loop aca-mir-449c


Accession
MI0018905
Description
Anolis carolinensis aca-mir-449c precursor miRNA
Gene family
MIPF0000133; mir-449


Sequence

gugaugguuUGGCAGUGUACUCUUAGUUAGCUguuguauauauuacaGCAACUAAAUACACUUCCAUAuuauugc
((((((((.(((.((((((...((((((.(((((..........))))))))))).)))))).))).))))))))

Structure
        u   C      CUC      A     ugua 
gugauggu UGG AGUGUA   UUAGUU GCUgu    u
|||||||| ||| ||||||   |||||| |||||     
cguuauuA ACC UCACAU   AAUCAA CGaca    a
        U   U      --A      -     uuau 


Annotation confidence Not enough data
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Genome context
chr2: 2666231-2666305 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from aca-mir-449c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature aca-miR-449c-5p

Accession MIMAT0022014
Description Anolis carolinensis aca-miR-449c-5p mature miRNA
Sequence 10 - UGGCAGUGUACUCUUAGUUAGCU - 32
Evidence experimental
Illumina [1]

Mature aca-miR-449c-3p

Accession MIMAT0022015
Description Anolis carolinensis aca-miR-449c-3p mature miRNA
Sequence 48 - GCAACUAAAUACACUUCCAUA - 68
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21775315
    MicroRNAs support a turtle + lizard clade
    "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
    "Biol Lett (2012) 8:104-107