miRBase entry: aca-mir-5394

Stem-loop aca-mir-5394


Accession
MI0018896
Description
Anolis carolinensis aca-mir-5394 precursor miRNA


Sequence

ccaagcugACCAUGAACCUCUGUCUAAGCUcauggccuuugugauauuaacUUGGACAGAGCUAAAUGGCCagcuagg
((.(((((.((((....(((((((((((...((.((....)).)).....)))))))))))....)))).))))).))

Structure
  a     A    GAAC           --CUc  g  c 
cc agcug CCAU    CUCUGUCUAAG     au gc u
|| ||||| ||||    |||||||||||     || ||  
gg ucgaC GGUA    GAGACAGGUUc     ua ug u
  a     C    AAUC           aauua  g  u 


Annotation confidence Not enough data
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Genome context
chr1: 208190484-208190561 [+]

Database links

Mature aca-miR-5394-5p

Accession MIMAT0022000
Description Anolis carolinensis aca-miR-5394-5p mature miRNA
Sequence 9 - ACCAUGAACCUCUGUCUAAGCU - 30
Evidence experimental
Illumina [1]

Mature aca-miR-5394-3p

Accession MIMAT0022001
Description Anolis carolinensis aca-miR-5394-3p mature miRNA
Sequence 52 - UUGGACAGAGCUAAAUGGCC - 71
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21775315
    MicroRNAs support a turtle + lizard clade
    "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
    "Biol Lett (2012) 8:104-107