miRBase entry: aca-mir-9-1

Stem-loop aca-mir-9-1


Accession
MI0018888
Description
Anolis carolinensis aca-mir-9-1 precursor miRNA
Gene family
MIPF0000014; mir-9

Literature search
1 open access papers mention aca-mir-9-1
(2 sentences)

Sequence

ggaagcgaguuguugUCUUUGGUUAUCUAGCUGUAugaguguguuggucuucAUAAAGCUAGAUAACCGAAAguaaaaacuccuuca
.((((.(((((.(((.((((((((((((((((.((((((.(.......))))))).)))))))))))).))))))).))))))))).

Structure
g    c     g   U    -            G      u ug 
 gaag gaguu uug CUUU GGUUAUCUAGCU UAugag g  u
 |||| ||||| ||| |||| |||||||||||| |||||| |  u
 cuuc cucaa aau gAAA CCAAUAGAUCGA AUAcuu c  g
a    -     a   -    G            A      - ug 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr2: 21612993-21613079 [-]

Database links

Mature aca-miR-9-5p

Accession MIMAT0021990
Description Anolis carolinensis aca-miR-9-5p mature miRNA
Sequence 16 - UCUUUGGUUAUCUAGCUGUA - 35
Evidence experimental
Illumina [1]

Mature aca-miR-9-1-3p

Accession MIMAT0021991
Description Anolis carolinensis aca-miR-9-1-3p mature miRNA
Sequence 53 - AUAAAGCUAGAUAACCGAAA - 72
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21775315
    MicroRNAs support a turtle + lizard clade
    "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
    "Biol Lett (2012) 8:104-107