miRBase entry: aca-mir-454

Stem-loop aca-mir-454


Accession
MI0018870
Description
Anolis carolinensis aca-mir-454 precursor miRNA
Gene family
MIPF0000174; mir-454


Sequence

cccuGUGAGAACUCUGAGGAUAAGacccuaucaauauugccucugcuucugugcuggauucaagUAGUGCAAUAUUGCUUAUAGGGUcuuuucuuuggggaggc
...........(((((((((.(((((((((((((((((((..((((((..((.....))..)))))).)))))))))...)))))))))).)))))))))....

Structure
cccuGUGAGAA         U          ---         cu      cu  g 
           CUCUGAGGA AAGacccuau   caauauugc  cugcuu  gu c
           ||||||||| ||||||||||   |||||||||  ||||||  || u
           gggguuucu uucUGGGAUA   GUUAUAACG  GAUgaa  ua g
-------cgga         u          UUC         -U      cu  g 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
GL343282.1: 1189889-1189992 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from aca-mir-454
Name Accession Chromosome Start End Strand Confidence




Database links

Mature aca-miR-454-5p

Accession MIMAT0021962
Description Anolis carolinensis aca-miR-454-5p mature miRNA
Sequence 5 - GUGAGAACUCUGAGGAUAAG - 24
Evidence experimental
Illumina [1]

Mature aca-miR-454-3p

Accession MIMAT0021963
Description Anolis carolinensis aca-miR-454-3p mature miRNA
Sequence 65 - UAGUGCAAUAUUGCUUAUAGGGU - 87
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21775315
    MicroRNAs support a turtle + lizard clade
    "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
    "Biol Lett (2012) 8:104-107