miRBase entry: aca-mir-449a

Stem-loop aca-mir-449a

Accession

MI0018867

Description

Anolis carolinensis aca-mir-449a precursor miRNA

Gene family

MIPF0000133; mir-449

Sequence

ugugugguggaaUGGCAGUGUAUUGUUAGCUGGAugaguaucucaaugcccccagcugacauucagcugccaaucuacggcacauau
(((((.(((((.(((((((....((((((((((..(.((((....))))).))))))))))....))))))).))))).)))))...

Structure

---     g     a       GUAU          Au a    c 
   ugugu gugga UGGCAGU    UGUUAGCUGG  g guau u
   ||||| ||||| |||||||    ||||||||||  | ||||  
   acacg caucu accgucg    acagucgacc  c cgua c
uau     g     a       acuu          -c -    a

Annotation confidence Not enough data

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Genome context

chr2: 2665566-2665652 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from aca-mir-449a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature aca-miR-449a

Accession	MIMAT0021958
Description	Anolis carolinensis aca-miR-449a mature miRNA
Sequence	13 - UGGCAGUGUAUUGUUAGCUGGA - 34
Evidence	experimental Illumina [1]

References

PubMed ID: 21775315
MicroRNAs support a turtle + lizard clade
"Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
"Biol Lett (2012) 8:104-107