Stem-loop aca-mir-34a

Accession

MI0018857

Description

Anolis carolinensis aca-mir-34a precursor miRNA

Gene family

MIPF0000039; mir-34

Sequence

uugccAGGCAGUGUAGUUAGCUGAUUGacgaggcaacaGUCACUAACAACACGGCCAGGUga
(((((.(((.((((.(((((.((((((.........))))))))))).)))).))).)))))

Structure

     A   A    A     C      acg 
uugcc GGC GUGU GUUAG UGAUUG   a
||||| ||| |||| ||||| ||||||   g
agUGG CCG CACA CAAUC ACUGac   g
     A   G    A     -      aac 

Annotation confidence Not enough data

Genome context

GL343521.1: 196050-196111 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from aca-mir-34a

Mature aca-miR-34a-5p

• Accession: MIMAT0021939
• Description: Anolis carolinensis aca-miR-34a-5p mature miRNA
• Sequence: 6 - AGGCAGUGUAGUUAGCUGAUUG - 27
• Evidence: experimental ; Illumina [1]

Mature aca-miR-34a-3p

• Accession: MIMAT0021940
• Description: Anolis carolinensis aca-miR-34a-3p mature miRNA
• Sequence: 39 - GUCACUAACAACACGGCCAGGU - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21775315
   MicroRNAs support a turtle + lizard clade
   "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
   "Biol Lett (2012) 8:104-107