Stem-loop aca-mir-338

Accession

MI0018856

Description

Anolis carolinensis aca-mir-338 precursor miRNA

Gene family

MIPF0000097; mir-338

Sequence

gcuccuuguccucAACAAUAUCCUGGUGCUGAGUGaguggcacucaaagacUCCAGCAUCAGUGAUUUUGUUgaagagggugagc
((((.((.((.(((((((.(((((((((((((((((((...))))....))).))))))))).))).))))))).)).)).))))

Structure

    c  g  c       U   -         -   ----    g 
gcuc uu uc ucAACAA AUC CUGGUGCUG AGU    Gagu  
|||| || || ||||||| ||| ||||||||| |||    |||| g
cgag gg ag agUUGUU UAG GACUACGAC Uca    cuca  
    u  g  a       U   U         C   gaaa    c 

Annotation confidence Not enough data

Genome context

chr2: 99499963-99500047 [+]

Mature aca-miR-338-5p

• Accession: MIMAT0021937
• Description: Anolis carolinensis aca-miR-338-5p mature miRNA
• Sequence: 14 - AACAAUAUCCUGGUGCUGAGUG - 35
• Evidence: experimental ; Illumina [1]

Mature aca-miR-338-3p

• Accession: MIMAT0021938
• Description: Anolis carolinensis aca-miR-338-3p mature miRNA
• Sequence: 52 - UCCAGCAUCAGUGAUUUUGUU - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21775315
   MicroRNAs support a turtle + lizard clade
   "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
   "Biol Lett (2012) 8:104-107