miRBase entry: aca-mir-33-2

Stem-loop aca-mir-33-2


Accession
MI0018855
Description
Anolis carolinensis aca-mir-33-2 precursor miRNA
Gene family
MIPF0000070; mir-33


Sequence

agcucaaguggcaguuucggggGUGCAUUGUAGUUGCAUUGCAuguguggccaagcugugCAAUGCCCCUCCAGUGCAGCCcugaggccguccucuaccagc
.(((..((.(((.(((((((((.(((((((.((..((((((((((.((......))))))))))))..)).))))))).))))))))).).)).))...)))

Structure
a   -ca  u  - a         G       U  UU          u  gg 
 gcu   ag gg c guuucgggg UGCAUUG AG  GCAUUGCAug gu  c
 |||   || || | ||||||||| ||||||| ||  |||||||||| ||   
 cga   uc cc g cggagucCC ACGUGAC UC  CGUAACgugu cg  c
-   cca  u  u c         G       C  CC          -  aa 


Annotation confidence Not enough data
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Genome context
GL343500.1: 19219-19320 [+]

Database links

Mature aca-miR-33-5p

Accession MIMAT0021934
Description Anolis carolinensis aca-miR-33-5p mature miRNA
Sequence 23 - GUGCAUUGUAGUUGCAUUGCA - 43
Evidence experimental
Illumina [1]

Mature aca-miR-33-2-3p

Accession MIMAT0021936
Description Anolis carolinensis aca-miR-33-2-3p mature miRNA
Sequence 61 - CAAUGCCCCUCCAGUGCAGCC - 81
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21775315
    MicroRNAs support a turtle + lizard clade
    "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
    "Biol Lett (2012) 8:104-107