miRBase entry: aca-mir-30e

Stem-loop aca-mir-30e


Accession
MI0018851
Description
Anolis carolinensis aca-mir-30e precursor miRNA
Gene family
MIPF0000005; mir-30


Sequence

uaggcaguugugcuccUGUAAACAUCCUUGACUGGAAGCugugcaaggcucaaaggggCUUUCAGUCGGAUGUUUACAGCggcaggcugcugc
..((((((..((((.((((((((((((..(((((((((((.(............).))))))))))))))))))))))).)))).))))))..

Structure
ua      ug    c            UU           g gcaag 
  ggcagu  ugcu cUGUAAACAUCC  GACUGGAAGCu u     g
  ||||||  |||| ||||||||||||  ||||||||||| |      
  ucgucg  acgg GACAUUUGUAGG  CUGACUUUCgg g     c
cg      -g    C            --           g aaacu 


Annotation confidence Not enough data
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Genome context
GL343308.1: 250287-250379 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from aca-mir-30e
Name Accession Chromosome Start End Strand Confidence




Database links

Mature aca-miR-30e-5p

Accession MIMAT0021928
Description Anolis carolinensis aca-miR-30e-5p mature miRNA
Sequence 17 - UGUAAACAUCCUUGACUGGAAGC - 39
Evidence experimental
Illumina [1]

Mature aca-miR-30e-3p

Accession MIMAT0021929
Description Anolis carolinensis aca-miR-30e-3p mature miRNA
Sequence 59 - CUUUCAGUCGGAUGUUUACAGC - 80
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21775315
    MicroRNAs support a turtle + lizard clade
    "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
    "Biol Lett (2012) 8:104-107