miRBase entry: aca-mir-30a

Stem-loop aca-mir-30a


Accession
MI0018847
Description
Anolis carolinensis aca-mir-30a precursor miRNA
Gene family
MIPF0000005; mir-30


Sequence

uguugacggugagcgacUGUAAACAUCCUCGACUGGAAGcugugaagcaguagaugaagCUUUCAGUCGGAUGUUUGCAGCugccaacugccac
...((.((((..(((.((((((((((((..(((((((((((................))))))))))))))))))))))).)))..)))).)).

Structure
ugu  a    ga   a            UC           gugaagc 
   ug cggu  gcg cUGUAAACAUCC  GACUGGAAGcu       a
   || ||||  ||| ||||||||||||  |||||||||||        
   ac guca  cgu GACGUUUGUAGG  CUGACUUUCga       g
--c  c    ac   C            --           aguagau 


Annotation confidence Not enough data
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Genome context
chr1: 168155605-168155698 [-]

Database links

Mature aca-miR-30a-5p

Accession MIMAT0021920
Description Anolis carolinensis aca-miR-30a-5p mature miRNA
Sequence 18 - UGUAAACAUCCUCGACUGGAAG - 39
Evidence experimental
Illumina [1]

Mature aca-miR-30a-3p

Accession MIMAT0021921
Description Anolis carolinensis aca-miR-30a-3p mature miRNA
Sequence 60 - CUUUCAGUCGGAUGUUUGCAGC - 81
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21775315
    MicroRNAs support a turtle + lizard clade
    "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
    "Biol Lett (2012) 8:104-107