miRBase entry: aca-mir-302b

Stem-loop aca-mir-302b


Accession
MI0018846
Description
Anolis carolinensis aca-mir-302b precursor miRNA
Gene family
MIPF0000071; mir-302


Sequence

gacugcuucuacuuuaacauggaggugcuuucugugcauauaaaaagUAAGUGCUUCCAUGUUUUAGUAGaggugaa
....(((((((((..(((((((((((((((.((............)).)))))))))))))))..)))))))))...

Structure
gacu         uu               u  gugca 
    gcuucuacu  aacauggaggugcuu cu     u
    |||||||||  ||||||||||||||| ||      
    uggaGAUGA  UUGUACCUUCGUGAA ga     a
-aag         UU               U  aaaau 


Annotation confidence Not enough data
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Genome context
chr5: 142962973-142963049 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from aca-mir-302b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature aca-miR-302b

Accession MIMAT0021919
Description Anolis carolinensis aca-miR-302b mature miRNA
Sequence 48 - UAAGUGCUUCCAUGUUUUAGUAG - 70
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21775315
    MicroRNAs support a turtle + lizard clade
    "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
    "Biol Lett (2012) 8:104-107