miRBase entry: aca-mir-301b

Stem-loop aca-mir-301b


Accession
MI0018845
Description
Anolis carolinensis aca-mir-301b precursor miRNA
Gene family
MIPF0000034; mir-130


Sequence

aggcugcugggauugaugGCUCUGACAGUGUUGCACUACugucuacacaaauuaagCAGUGCAAUAAUAUUGUCAAAGCauuugguuccagucc
.((..(((((((((((..(((.(((((((((((((((.((..............)).))))))...))))))))).)))..)))))))))))))

Structure
a  cu           ug   C         ---      A  gucuac 
 gg  gcugggauuga  GCU UGACAGUGU   UGCACU Cu      a
 ||  |||||||||||  ||| |||||||||   |||||| ||       
 cc  ugaccuugguu  CGA ACUGUUAUA   ACGUGA ga      c
-  --           ua   A         AUA      C  auuaaa 


Annotation confidence Not enough data
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Genome context
GL343282.1: 1200188-1200281 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from aca-mir-301b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature aca-miR-301b-5p

Accession MIMAT0021917
Description Anolis carolinensis aca-miR-301b-5p mature miRNA
Sequence 19 - GCUCUGACAGUGUUGCACUAC - 39
Evidence experimental
Illumina [1]

Mature aca-miR-301b-3p

Accession MIMAT0021918
Description Anolis carolinensis aca-miR-301b-3p mature miRNA
Sequence 57 - CAGUGCAAUAAUAUUGUCAAAGC - 79
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21775315
    MicroRNAs support a turtle + lizard clade
    "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
    "Biol Lett (2012) 8:104-107