Stem-loop aca-mir-301a

Accession

MI0018844

Description

Anolis carolinensis aca-mir-301a precursor miRNA

Gene family

MIPF0000034; mir-130

Sequence

uuccugcugcggacaaggGCUCUGACUUCAUUGCACUACUguacuucccaacuagCAGUGCAAUAGUAUUGUCAAAGCacuugcaagcagaacugaca
......((((...((((.(((.((((..(((((((((.((((........)).)).)))))))).)....)))).))).))))...))))........

Structure

--uuccug    gga    g   C    --UU -        A  -  acu 
        cugc   caag GCU UGAC    C AUUGCACU CU gu   u
        ||||   |||| ||| ||||    | |||||||| || ||    
        gacg   guuc CGA ACUG    G UAACGUGA ga ca   c
acagucaa    aac    a   A    UUAU A        C  u  acc 

Annotation confidence Not enough data

Genome context

GL343684.1: 336494-336591 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from aca-mir-301a

Mature aca-miR-301a-5p

• Accession: MIMAT0021915
• Description: Anolis carolinensis aca-miR-301a-5p mature miRNA
• Sequence: 19 - GCUCUGACUUCAUUGCACUACU - 40
• Evidence: experimental ; Illumina [1]

Mature aca-miR-301a-3p

• Accession: MIMAT0021916
• Description: Anolis carolinensis aca-miR-301a-3p mature miRNA
• Sequence: 56 - CAGUGCAAUAGUAUUGUCAAAGC - 78
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21775315
   MicroRNAs support a turtle + lizard clade
   "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
   "Biol Lett (2012) 8:104-107