Stem-loop aca-mir-29b-1

Accession

MI0018842

Description

Anolis carolinensis aca-mir-29b-1 precursor miRNA

Gene family

MIPF0000009; mir-29

Sequence

gugugucuuccucuggaagcugguuucacaugguggcuuagauuuuuccaucuuuguaucUAGCACCAUUUGAAAUCAGUGuucuaggagcaagaauuaca
(((..((((.((((((((((((((((((.((((((.((.((((..............)))))))))))).)))))))))).))))).))).))))..))).

Structure

-   ug    c   -     -          c      g  u    uuuucc 
 gug  ucuu cuc uggaa gcugguuuca auggug cu agau      a
 |||  |||| ||| ||||| |||||||||| |||||| || ||||       
 cau  agaa gag aucuu UGACUAAAGU UACCAC GA Ucua      u
a   ua    c   g     G          U      -  -    uguuuc 

Annotation confidence Not enough data

Genome context

GL343255.1: 1940177-1940277 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from aca-mir-29b-1

Mature aca-miR-29b

• Accession: MIMAT0021914
• Description: Anolis carolinensis aca-miR-29b mature miRNA
• Sequence: 61 - UAGCACCAUUUGAAAUCAGUG - 81
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21775315
   MicroRNAs support a turtle + lizard clade
   "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
   "Biol Lett (2012) 8:104-107