Stem-loop sequence aca-mir-24-2

Accession

MI0018834 (change log)

Description

Anolis carolinensis miR-24-2 stem-loop

Gene family

MIPF0000041; mir-24

Stem-loop

   ggau  a c  uc    g  g   a         ua     uc  au 
5'     gg c cg  cucc gu ccu cugagcuga  ucagu  ug  u
       || | ||  |||| || ||| |||||||||  |||||  ||   
3'     cc g gc  gagg ca gga gacuugacu  gguca  ac  u
   aaau  c a  -u    a  a   c         -c     -c  au 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (AnoCar2.0; GCA_000090745.2): chr2: 40591310-40591402 [-]
• Overlapping transcripts:

  sense

  ENSACAT00000018346 ; aca-mir-24-2-201; exon 1

Clustered miRNAs

< 10kb from aca-mir-24-2

• aca-mir-23b: chr2: 40591992-40592077 [-]
• aca-mir-27b: chr2: 40591774-40591849 [-]
• aca-mir-24-2: chr2: 40591310-40591402 [-]

Database links

• miRBase Tracker:MI0018834

Mature sequence aca-miR-24-2-5p

• Accession: MIMAT0021901
• Previous IDs: aca-miR-24-2*
• Sequence: 20 - ugccuacugagcugauaucag - 40
• Evidence: experimental; Illumina [1]

Mature sequence aca-miR-24-3p

• Accession: MIMAT0021900
• Previous IDs: aca-miR-24
• Sequence: 57 - uggcucaguucagcaggaacag - 78
• Evidence: experimental; Illumina [1]

References

1. PMID:21775315 "MicroRNAs support a turtle + lizard clade" Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ Biol Lett. 8:104-107(2012).