Stem-loop sequence aca-mir-24-1

Accession

MI0018833 (change log)

Description

Anolis carolinensis miR-24-1 stem-loop

Gene family

MIPF0000041; mir-24

Stem-loop

   ugca     u  c    c  g   a         uac      gcuu 
5'     gggcu gg cuuc gu ccu cugagcuga   ucaguu    u
       ||||| || |||| || ||| |||||||||   ||||||     
3'     cccga cc gagg ca gga gacuugacu   ggucaa    a
   cuga     -  u    a  a   c         --c      auag 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (AnoCar2.0; GCA_000090745.2): chr2: 29157637-29157729 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from aca-mir-24-1

• aca-mir-23a: chr2: 29158329-29158420 [-]
• aca-mir-27a: chr2: 29157932-29158004 [-]
• aca-mir-24-1: chr2: 29157637-29157729 [-]

Database links

• miRBase Tracker:MI0018833

Mature sequence aca-miR-24-1-5p

• Accession: MIMAT0021899
• Previous IDs: aca-miR-24-1*
• Sequence: 20 - ugccuacugagcugauacucagu - 42
• Evidence: experimental; Illumina [1]

Mature sequence aca-miR-24-3p

• Accession: MIMAT0021900
• Previous IDs: aca-miR-24
• Sequence: 57 - uggcucaguucagcaggaacag - 78
• Evidence: experimental; Illumina [1]

References

1. PMID:21775315 "MicroRNAs support a turtle + lizard clade" Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ Biol Lett. 8:104-107(2012).