miRBase entry: aca-mir-217

Stem-loop aca-mir-217


Accession
MI0018821
Description
Anolis carolinensis aca-mir-217 precursor miRNA
Gene family
MIPF0000077; mir-217


Sequence

uuuugaugucgcagaUACUGCAUCAGGAACUGAUUGGggaauaaucauguacCAUCAGUUCCUAAUGCAUUGCCuucagcaucuaaa
....(((((.(.((.((.(((((.((((((((((.((..............)))))))))))).))))).)).)).).)))))....

Structure
uuuu     c c  a  C     C          U  ggaaua 
    gaugu g ag UA UGCAU AGGAACUGAU GG      a
    ||||| | || || ||||| |||||||||| ||       
    cuacg c uC GU ACGUA UCCUUGACUA Cc      u
aaau     a u  C  U     A          -  auguac 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr1: 256233867-256233953 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from aca-mir-217
Name Accession Chromosome Start End Strand Confidence




Database links

Mature aca-miR-217-5p

Accession MIMAT0021878
Description Anolis carolinensis aca-miR-217-5p mature miRNA
Sequence 16 - UACUGCAUCAGGAACUGAUUGG - 37
Evidence experimental
Illumina [1]

Mature aca-miR-217-3p

Accession MIMAT0021879
Description Anolis carolinensis aca-miR-217-3p mature miRNA
Sequence 53 - CAUCAGUUCCUAAUGCAUUGCC - 74
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21775315
    MicroRNAs support a turtle + lizard clade
    "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
    "Biol Lett (2012) 8:104-107