miRBase entry: aca-mir-20b

Stem-loop aca-mir-20b

Accession

MI0018813

Description

Anolis carolinensis aca-mir-20b precursor miRNA

Gene family

MIPF0000001; mir-17

Sequence

cucgcaguguCAAAGUGCUCAUAGUGCAGGUAguuaaugcacccaaaucuACUGUAAUGUGGGCACUUACAguacugccggau
((.((((((...(((((((((((.(((((.(((...............)))))))).)))))))))))....)))))).))..

Structure

--  c      -uCA           G     G   uuaaug 
  cu gcagug    AAGUGCUCAUA UGCAG UAg      c
  || ||||||    ||||||||||| ||||| |||      a
  gg cgucau    UUCACGGGUGU AUGUC Auc      c
ua  c      gACA           A     -   uaaacc

Annotation confidence Not enough data

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Genome context

GL344214.1: 24032-24114 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from aca-mir-20b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature aca-miR-20b-5p

Accession	MIMAT0021863
Description	Anolis carolinensis aca-miR-20b-5p mature miRNA
Sequence	11 - CAAAGUGCUCAUAGUGCAGGUA - 32
Evidence	experimental Illumina [1]

Mature aca-miR-20b-3p

Accession	MIMAT0021864
Description	Anolis carolinensis aca-miR-20b-3p mature miRNA
Sequence	51 - ACUGUAAUGUGGGCACUUACA - 71
Evidence	experimental Illumina [1]

References

PubMed ID: 21775315
MicroRNAs support a turtle + lizard clade
"Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
"Biol Lett (2012) 8:104-107