miRBase entry: aca-mir-206

Stem-loop aca-mir-206


Accession
MI0018810
Description
Anolis carolinensis aca-mir-206 precursor miRNA
Gene family
MIPF0000038; mir-1

Literature search
1 open access papers mention aca-mir-206
(6 sentences)

Sequence

uuugucuuuuugagauUACAUGCUUCUUUAUAUCUCCAUaugaauugccuugcuaUGGAAUGUAAGGAAGUGUGUGguuucaaggagaagaac
....(((((((((((((((((((((((((((((.((((((..((.....))..))))))))))))))))))))))))))))))))))).....

Structure
-uuug                             C      ug  u 
     ucuuuuugagauUACAUGCUUCUUUAUAU UCCAUa  aa u
     ||||||||||||||||||||||||||||| ||||||  || g
     agaggaacuuugGUGUGUGAAGGAAUGUA AGGUau  uu c
caaga                             -      cg  c 


Annotation confidence Not enough data
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Genome context
chr1: 122853025-122853117 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from aca-mir-206
Name Accession Chromosome Start End Strand Confidence




Database links

Mature aca-miR-206-5p

Accession MIMAT0021857
Description Anolis carolinensis aca-miR-206-5p mature miRNA
Sequence 17 - UACAUGCUUCUUUAUAUCUCCAU - 39
Evidence experimental
Illumina [1]

Mature aca-miR-206-3p

Accession MIMAT0021858
Description Anolis carolinensis aca-miR-206-3p mature miRNA
Sequence 56 - UGGAAUGUAAGGAAGUGUGUG - 76
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21775315
    MicroRNAs support a turtle + lizard clade
    "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
    "Biol Lett (2012) 8:104-107