miRBase entry: aca-mir-200b

Stem-loop aca-mir-200b


Accession
MI0018803
Description
Anolis carolinensis aca-mir-200b precursor miRNA
Gene family
MIPF0000019; mir-8


Sequence

aaaccaucuugggaggucauugcCAUCUUACUGGGCAGCAUUGgauguuuucugucuuucUAAUACUGCCUGGUAAUGAUGAuuguggccuucucacgcc
..........((((((((((...(((((((((((((((.((((((.............)))))).))))))))))).))))...))))))))))......

Structure
aaaccaucuu          ugc    -           C      uguuu 
          gggaggucau   CAUC UUACUGGGCAG AUUGga     u
          ||||||||||   |||| ||||||||||| ||||||     c
          ucuuccggug   GUAG AAUGGUCCGUC UAAUcu     u
----ccgcac          uuA    U           A      uucug 


Annotation confidence Not enough data
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Genome context
GL343647.1: 274634-274733 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from aca-mir-200b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature aca-miR-200b-5p

Accession MIMAT0021846
Description Anolis carolinensis aca-miR-200b-5p mature miRNA
Sequence 24 - CAUCUUACUGGGCAGCAUUG - 43
Evidence experimental
Illumina [1]

Mature aca-miR-200b-3p

Accession MIMAT0021847
Description Anolis carolinensis aca-miR-200b-3p mature miRNA
Sequence 61 - UAAUACUGCCUGGUAAUGAUGA - 82
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21775315
    MicroRNAs support a turtle + lizard clade
    "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
    "Biol Lett (2012) 8:104-107