miRBase entry: aca-mir-1a-1

Stem-loop aca-mir-1a-1


Accession
MI0018799
Description
Anolis carolinensis aca-mir-1a-1 precursor miRNA
Gene family
MIPF0000038; mir-1

Literature search
1 open access papers mention aca-mir-1a-1
(6 sentences)

Sequence

auuaaaccuguugagagcACAUACUUCUUUAUGUACCCAUaugaagauacaauguuaUGGAAUGUAAAGAAGUAUGUAUuuuugauagguacaaac
.....((((((((((((.((((((((((((((((..(((((..............))))).)))))))))))))))).))))))))))))......

Structure
-auuaa            c                AC     ugaaga 
      accuguugagag ACAUACUUCUUUAUGU  CCAUa      u
      |||||||||||| ||||||||||||||||  |||||       
      uggauaguuuuU UGUAUGAAGAAAUGUA  GGUau      a
caaaca            A                -A     uguaac 


Annotation confidence Not enough data
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Genome context
chr4: 38859440-38859535 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from aca-mir-1a-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature aca-miR-1a-1-5p

Accession MIMAT0021839
Description Anolis carolinensis aca-miR-1a-1-5p mature miRNA
Sequence 19 - ACAUACUUCUUUAUGUACCCAU - 40
Evidence experimental
Illumina [1]

Mature aca-miR-1a-3p

Accession MIMAT0021840
Description Anolis carolinensis aca-miR-1a-3p mature miRNA
Sequence 58 - UGGAAUGUAAAGAAGUAUGUAU - 79
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21775315
    MicroRNAs support a turtle + lizard clade
    "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
    "Biol Lett (2012) 8:104-107