miRBase entry: aca-mir-194-1

Stem-loop aca-mir-194-1


Accession
MI0018789
Description
Anolis carolinensis aca-mir-194-1 precursor miRNA
Gene family
MIPF0000055; mir-194


Sequence

auacagugucgucaagUGUAACAGCAACUCCAUGUGGAauaaguagauuuCCAGUGGAGGUGCUGUUACUUUugaagcuacugac
...(((((.(.(((((.(((((((((.((((((.(((((.........))))))))))).))))))))).))))).).)))))..

Structure
aua     u g     U         A      G     uaa 
   cagug c ucaag GUAACAGCA CUCCAU UGGAa   g
   ||||| | ||||| ||||||||| |||||| |||||   u
   gucau g aguUU CAUUGUCGU GAGGUG ACCuu   a
-ca     c a     U         G      -     uag 


Annotation confidence Not enough data
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Genome context
chr1: 243290929-243291013 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from aca-mir-194-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature aca-miR-194-5p

Accession MIMAT0021828
Description Anolis carolinensis aca-miR-194-5p mature miRNA
Sequence 17 - UGUAACAGCAACUCCAUGUGGA - 38
Evidence experimental
Illumina [1]

Mature aca-miR-194-1-3p

Accession MIMAT0021829
Description Anolis carolinensis aca-miR-194-1-3p mature miRNA
Sequence 51 - CCAGUGGAGGUGCUGUUACUUU - 72
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21775315
    MicroRNAs support a turtle + lizard clade
    "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
    "Biol Lett (2012) 8:104-107