Stem-loop aca-mir-18a

Accession

MI0018783

Description

Anolis carolinensis aca-mir-18a precursor miRNA

Gene family

MIPF0000001; mir-17

Sequence

agugacugcuuuuuguucUAAGGUGCAUCUAGUGCAGAUAGugaaguagauuagcaucuACUGCCCUAAGUGCUCCUUCUGgcauaagaaguugug
....((.(((((((((.((((((.((((.(((.((((.(((((..(.....)..)).))))))).))).)))).)))..))).))))))))).)).

Structure

agug  u         u   --   U    C   U    A   -  aa u 
    ac gcuuuuugu cUA  AGG GCAU UAG GCAG UAG ug  g a
    || ||||||||| |||  ||| |||| ||| |||| ||| ||  | g
    ug ugaagaaua gGU  UCC CGUG AUC CGUC Auc ac  u a
---g  u         c   CU   U    A   C    -   u  ga u 

Annotation confidence Not enough data

Genome context

GL343584.1: 108387-108482 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from aca-mir-18a

Mature aca-miR-18a-5p

• Accession: MIMAT0021817
• Description: Anolis carolinensis aca-miR-18a-5p mature miRNA
• Sequence: 19 - UAAGGUGCAUCUAGUGCAGAUAG - 41
• Evidence: experimental ; Illumina [1]

Mature aca-miR-18a-3p

• Accession: MIMAT0021818
• Description: Anolis carolinensis aca-miR-18a-3p mature miRNA
• Sequence: 60 - ACUGCCCUAAGUGCUCCUUCUG - 81
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21775315
   MicroRNAs support a turtle + lizard clade
   "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
   "Biol Lett (2012) 8:104-107