miRBase entry: aca-mir-181a-3

Stem-loop aca-mir-181a-3


Accession
MI0018777
Description
Anolis carolinensis aca-mir-181a-3 precursor miRNA
Gene family
MIPF0000007; mir-181

Literature search
1 open access papers mention aca-mir-181a-3
(1 sentences)

Sequence

uaaaaggucuugggaAACAUUCAACGCUGUCGGUGAGUuuugucaaugaagucaaaccaucgacuguugaguguacccugcggcuuuuacaaa
..(((((((.((((..((((((((((..(((((((.((((.(.(......).))))))))))))))))))))))..)))).))))))).....

Structure
---ua       u    aA          CU       A    u u aa 
     aaagguc uggg  ACAUUCAACG  GUCGGUG GUuu g c  u
     ||||||| ||||  ||||||||||  ||||||| |||| | |   
     uuuucgg gucc  ugugaguugu  cagcuac caaa c g  g
aaaca       c    ca          --       -    - u aa 


Annotation confidence Not enough data
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Genome context
chr2: 77116225-77116317 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from aca-mir-181a-3
Name Accession Chromosome Start End Strand Confidence




Database links

Mature aca-miR-181a

Accession MIMAT0021809
Description Anolis carolinensis aca-miR-181a mature miRNA
Sequence 16 - AACAUUCAACGCUGUCGGUGAGU - 38
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21775315
    MicroRNAs support a turtle + lizard clade
    "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
    "Biol Lett (2012) 8:104-107