miRBase entry: aca-mir-15b

Stem-loop aca-mir-15b


Accession
MI0018765
Description
Anolis carolinensis aca-mir-15b precursor miRNA
Gene family
MIPF0000006; mir-15


Sequence

cccggaggugaugUAGCAGCACAACAUGGUUUGUagggacacagaagauaCAGACCGUUCUGGGCUGCCUCAuuaccuuuu
...((((((((((..(((((.((..((((((((((.............))))))))))..)).)))))..)))))))))).

Structure
ccc          UA     A  AC          gggac 
   ggaggugaug  GCAGC CA  AUGGUUUGUa     a
   ||||||||||  ||||| ||  ||||||||||     c
   uuuccauuAC  CGUCG GU  UGCCAGACau     a
--u          UC     G  CU          agaag 


Annotation confidence Not enough data
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Genome context
GL343761.1: 167247-167327 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from aca-mir-15b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature aca-miR-15b-5p

Accession MIMAT0021790
Description Anolis carolinensis aca-miR-15b-5p mature miRNA
Sequence 14 - UAGCAGCACAACAUGGUUUGU - 34
Evidence experimental
Illumina [1]

Mature aca-miR-15b-3p

Accession MIMAT0021791
Description Anolis carolinensis aca-miR-15b-3p mature miRNA
Sequence 51 - CAGACCGUUCUGGGCUGCCUCA - 72
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21775315
    MicroRNAs support a turtle + lizard clade
    "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
    "Biol Lett (2012) 8:104-107