miRBase entry: aca-mir-139

Stem-loop aca-mir-139


Accession
MI0018749
Description
Anolis carolinensis aca-mir-139 precursor miRNA
Gene family
MIPF0000117; mir-139


Sequence

cuggcuguauUCUACAGUGCAUGUGUCUCCAGUGuuuuccagcgacUGGAGAUACGGCCCUGUUGGAauaacagccag
(((((((((((((((((.((.(((((((((((((((....))).)))))))))))))).))).)))))).))))))))

Structure
        -      -   U  A            -   u 
cuggcugu auUCUA CAG GC UGUGUCUCCAGU Guu u
|||||||| |||||| ||| || |||||||||||| |||  
gaccgaca uaAGGU GUC CG GCAUAGAGGUca cga c
        a      U   C  -            g   c 


Annotation confidence Not enough data
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Genome context
GL343695.1: 186496-186573 [-]

Database links

Mature aca-miR-139-5p

Accession MIMAT0021762
Description Anolis carolinensis aca-miR-139-5p mature miRNA
Sequence 11 - UCUACAGUGCAUGUGUCUCCAGUG - 34
Evidence experimental
Illumina [1]

Mature aca-miR-139-3p

Accession MIMAT0021763
Description Anolis carolinensis aca-miR-139-3p mature miRNA
Sequence 47 - UGGAGAUACGGCCCUGUUGGA - 67
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21775315
    MicroRNAs support a turtle + lizard clade
    "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
    "Biol Lett (2012) 8:104-107